Wing Commander is a media franchise consisting of space combat simulation video games from Origin Systems, Inc., an animated television series, a feature film, a collectible card game, a series of novels, and action figures. The franchise originated in 1990 with the release of video game Wing Commander.

A new Kilrathi secret weapon destroys the Terran colony of Goddard. In retribution, the Confederation plans a daring raid, Operation Thor's Hammer. Tiger's Claw must follow the Kilrathi deep into their own territory and destroy their new super weapon, the dreadnaught Sivar.

The Secret Missions was ported to the FM Towns, SNES, Sony PSP (as part of the EA Replay bundle), and was included with Wing Commander on the 3DO and Macintosh as part of Super Wing Commander.